Publications

KEY RESEARCH ARTICLES * corresponding authorship

See also papers we published as contributing authors § equal contribution

L. Loeff, S. J. J. Brouns*, C. Joo* (under revision)

L. Restrepo-Pérez, C. Joo*, C. Dekker* (submitted)

J. van Ginkel, M. Filius, M. Szczepaniak , P. Tulinski , A. S. Meyer*, C. Joo* (submitted)

L. Restrepo-Pérez^§
, S. John
^§
, A. Aksimentiev*, C. Joo*, C. Dekker* (under revision)

S. M. Klum
^§
, S. D. Chandradoss^§
, N. T. Schirle, C. Joo*, I. J. MacRae* (under revision)

D. C. Swarts
^§
, M. Szczepaniak^§
, G. Sheng
^§
, S. D. Chandradoss, Y. Zhu, E. M. Timmers, Y. Zhang, J. Lou, Y. Wang*,
C. Joo*, & J. van der Oost* "Autonomous generation and loading of DNA guides by bacterial Argonaute"
Molecular Cell (2017) (interactive, PDF)

- Highlight in Molecular Cell

M. Fareh, K. H. Yeom, A. C. Haagsma, S. Chauhan, I. Heo, & C. Joo* "TRBP ensures efficient Dicer processing of precursor microRNA in RNA-crowded environments" Nature Communications 7:13694 doi:10.1038/ncomms13694 (2016) (open access)

N. T. Schirle, J. Sheu-Gruttadauria, S. D. Chandradoss, C. Joo*, & I. J. MacRae* “Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets.” eLife 4:e07646 (2015) (open access)

Y. Yao, M. Docter, J. van Ginkel, D. de Ridder*, & C. Joo* "Single-molecule protein sequencing through fingerprinting: computational assessment" Physical Biology, 12(5):055003 (2015) (open access)

S. D. Chandradoss, N. T. Schirle
^§
, M. Szczepaniak^§
, I. J. MacRae*, & C. Joo* “A dynamic search process underlies microRNA targeting” Cell, 162(1):96-107 (2015) (interactive, PDF) (PMC free text)

- Highlight in Molecular Cell

B. Kim^§, M. Ha^§, L. Loeff^§, H. Chang, D. K. Simanshu, S. Li, M. Fareh, D. J. Patel, C. Joo*, & V. N. Kim* "TUT7 controls the fate of precursor microRNAs by using three different uridylation mechanisms" EMBO Journal, 34(13):1801-15 (2015) (open access)

T. R. Blosser^§, L. Loeff^§, E. R. Westra, M. Vlot, T. Kunne, M. Sobota, C. Dekker, S. J. J. Brouns*, & C. Joo* "Two Distinct DNA Binding Modes Guide Dual Roles of a CRISPR-Cas Protein Complex" Molecular Cell, 58(1):50-60 (2015) (interactive, PDF) (PMC free text)

K. H. Yeom, I. Heo, J. Lee, S. Hohng, V. N. Kim*, & C. Joo*, "Single Molecule Approach to Immunoprecipitated Protein Complexes: Insights into MiRNA Uridylation" EMBO Reports, 12, 690-696 (2011) (PDF, supplements) (PMC free text)

KEY REVIEW ARTICLES

M. Klein
^§
, S. D. Chandradoss^§
, M. Depken*, C. Joo* "Why Argonaute is needed to make microRNA target search fast and reliable" Seminars in Cell & Developmental Biology (2017) (open access)

C. Joo*, M. Fareh, V. N. Kim "Bringing single-molecule spectroscopy to macromolecular protein complexes" Trends in Biochemical Sciences, 38(1):30-37 (2013) (interactive, PDF) (PMC free text)

KEY PROTOCOLS

M. Fareh, L. Loeff, M. Szczepaniak, A. C. Haagsma, K. H. Yeom, C. Joo* "Single-molecule pull-down for investigating protein—nucleic acid interactions" Methods, 105:99-108 (2016) (PDF) (PMC free text)

- Published in a special series of Single-molecule probing by fluorescence and force detection

S. D. Chandradoss, A. C. Haagsma, Y. K. Lee, J. H. Hwang, J. M. Nam, & C. Joo* "Surface Passivation for Single-molecule Protein Studies" Journal of Visualized Experiments, (86), e50549, doi:10.3791/50549 (2014) (open access)

JoVE

PATENTS

C. Joo, C. Dekker, H. G. T. M. van Ginkel, A. S. Meyer, Single-molecule protein sequencing, WO2014014347

PAPERS PUBLISHED AS CONTRIBUTING AUTHORS

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